STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OOF44388.1EbgC protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (157 aa)    
Predicted Functional Partners:
OOF45380.1
Beta-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.817
OOF44389.1
C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
OOF44390.1
C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
OOF44391.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.631
OOF44387.1
3-dehydro-L-gulonate 2-dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LDH2/MDH2 oxidoreductase family.
 
    0.626
OOF44392.1
Carbohydrate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the FGGY kinase family.
       0.500
OOF44432.1
Galactose-1-epimerase; Converts alpha-aldose to the beta-anomer.
  
  
  0.431
Your Current Organism:
Rodentibacter rarus
NCBI taxonomy Id: 1908260
Other names: Bisgaard Taxon 17, CCUG 17206, DSM 103980, Pasteurellaceae bacterium 2005150027, Pasteurellaceae bacterium CCUG 17206, R. rarus, Rodentibacter rarus Adhikary et al. 2017, strain 2325/79, strain HPA 41
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