Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ANW22904.1Secretion protein HylD; Derived by automated computational analysis using gene prediction method: Protein Homology. (437 aa)    
Predicted Functional Partners:
BA953_01070
ABC transporter; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.989
ANW26453.1
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.957
ANW25608.1
Agglutination protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.890
ANW23018.1
Agglutination protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.888
ANW23729.1
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.849
ANW23017.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
  
 0.764
ANW25511.1
RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.672
ANW26451.1
Sulfate adenylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.665
ANW23386.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.634
TolC
Outer membrane channel protein TolC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.634
Your Current Organism:
Vibrio coralliilyticus
NCBI taxonomy Id: 190893
Other names: ATCC BAA-450, CAIM 616, LMG 20984, LMG:20984, V. coralliilyticus, Vibrio coralliilyticus Ben-Haim et al. 2003, Vibrio corallilyticus, Vibrio coralyticus, Vibrio sp. LMG 10953, strain YB1
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