Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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[Homology]
Score
ANW23422.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (344 aa)    
Predicted Functional Partners:
ANW26446.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.764
ANW26445.1
Chromosome partitioning protein ParA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.734
ANW22942.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.661
ANW26552.1
Isochorismatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.631
ANW23423.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.614
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
 
 0.589
ANW22941.1
Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.585
ANW25597.1
ATP-dependent helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.579
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.568
ANW23237.1
Taurine catabolism dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.564
Your Current Organism:
Vibrio coralliilyticus
NCBI taxonomy Id: 190893
Other names: ATCC BAA-450, CAIM 616, LMG 20984, LMG:20984, V. coralliilyticus, Vibrio coralliilyticus Ben-Haim et al. 2003, Vibrio corallilyticus, Vibrio coralyticus, Vibrio sp. LMG 10953, strain YB1
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