Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
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[Homology]
Score
kdkA3-deoxy-D-manno-octulosonic acid kinase; Catalyzes the ATP-dependent phosphorylation of the 3-deoxy-D- manno-octulosonic acid (Kdo) residue in Kdo-lipid IV(A) at the 4-OH position; Belongs to the protein kinase superfamily. KdkA/RfaP family. (229 aa)    
Predicted Functional Partners:
ANW24215.1
3-deoxy-D-manno-octulosonic acid transferase; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.
   
 0.996
ANW24219.1
Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.963
ANW24500.1
Phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.883
htpG
Molecular chaperone HtpG; Molecular chaperone. Has ATPase activity.
    
 0.882
ANW24604.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.862
ANW24220.1
Glycosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.852
ANW22712.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.843
udk
Uridine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.831
ANW25210.1
Histone deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.812
ANW26703.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
 0.809
Your Current Organism:
Vibrio coralliilyticus
NCBI taxonomy Id: 190893
Other names: ATCC BAA-450, CAIM 616, LMG 20984, LMG:20984, V. coralliilyticus, Vibrio coralliilyticus Ben-Haim et al. 2003, Vibrio corallilyticus, Vibrio coralyticus, Vibrio sp. LMG 10953, strain YB1
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