STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
smgHypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Smg family. (159 aa)    
Predicted Functional Partners:
ANW24289.1
DNA topoisomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.844
dprA
DNA protecting protein DprA; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.807
zapD
Cell division protein ZapD; Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity.
  
     0.715
ANW25093.1
Glycine cleavage system transcriptional repressor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.673
ANW24412.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.665
ANW23476.1
Starvation-inducible protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.641
ANW24428.1
Cytoplasmic protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.620
ANW24669.1
TIGR02099 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.545
def
Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.
       0.524
ANW24546.1
Pilus assembly protein PilP; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.522
Your Current Organism:
Vibrio coralliilyticus
NCBI taxonomy Id: 190893
Other names: ATCC BAA-450, CAIM 616, LMG 20984, LMG:20984, V. coralliilyticus, Vibrio coralliilyticus Ben-Haim et al. 2003, Vibrio corallilyticus, Vibrio coralyticus, Vibrio sp. LMG 10953, strain YB1
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.