Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
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[Homology]
Score
alaEHypothetical protein; Exports L-alanine; Belongs to the AlaE exporter family. (149 aa)    
Predicted Functional Partners:
ANW25328.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.721
uspB
Universal stress protein UspB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.720
malT
Transcriptional regulator MalT; Positively regulates the transcription of the maltose regulon whose gene products are responsible for uptake and catabolism of malto- oligosaccharides. Specifically binds to the promoter region of its target genes, recognizing a short DNA motif called the MalT box.
  
     0.713
ANW24506.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.695
ANW26412.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.676
ANW25730.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0149 family.
       0.672
DcuC
Anaerobic C4-dicarboxylate transporter DcuC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.667
ANW26413.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.662
ANW27328.1
Major facilitator superfamily transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.640
ANW25773.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.628
Your Current Organism:
Vibrio coralliilyticus
NCBI taxonomy Id: 190893
Other names: ATCC BAA-450, CAIM 616, LMG 20984, LMG:20984, V. coralliilyticus, Vibrio coralliilyticus Ben-Haim et al. 2003, Vibrio corallilyticus, Vibrio coralyticus, Vibrio sp. LMG 10953, strain YB1
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