Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BA953_24400Hypothetical protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology. (664 aa)    
Predicted Functional Partners:
ANW27256.1
Type VI secretion system ImpA domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.928
ANW25784.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
 0.809
ANW27259.1
Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.788
ANW24835.1
Aerobic respiration two-component sensor histidine kinase ArcB; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.762
BA953_18000
Cobalt-zinc-cadmium resistance protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.762
ANW26412.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
  
 0.732
ANW26413.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
  
 0.720
ANW27257.1
Type VI secretion system-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.707
ANW27261.1
Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.706
ANW27258.1
Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.691
Your Current Organism:
Vibrio coralliilyticus
NCBI taxonomy Id: 190893
Other names: ATCC BAA-450, CAIM 616, LMG 20984, LMG:20984, V. coralliilyticus, Vibrio coralliilyticus Ben-Haim et al. 2003, Vibrio corallilyticus, Vibrio coralyticus, Vibrio sp. LMG 10953, strain YB1
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