STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEL11419.1Uncharacterized conserved protein, NAD-dependent epimerase/dehydratase family. (350 aa)    
Predicted Functional Partners:
SEL11459.1
Predicted cell division protein, SepF homolog, DUF552 family.
       0.912
SEL12660.1
Zc3h12a-like Ribonuclease NYN domain-containing protein.
  
     0.717
SEK71908.1
Succinylglutamate desuccinylase / Aspartoacylase family protein.
 
     0.708
SEK41114.1
Phosphate transport system protein.
 
     0.678
SEK32849.1
LPXTG-site transpeptidase (sortase) family protein.
  
     0.676
SEK62610.1
Phosphate transport system protein.
 
     0.638
SEK43647.1
Hypothetical protein.
  
     0.633
SEL25401.1
Putative membrane protein.
  
     0.586
SEL14238.1
UDP-N-acetylmuramate--alanine ligase/UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase.
  
     0.585
SEL14196.1
Phospho-N-acetylmuramoyl-pentapeptide- transferase.
  
     0.555
Your Current Organism:
Methanobrevibacter gottschalkii
NCBI taxonomy Id: 190974
Other names: DSM 11977, M. gottschalkii, Methanobrevibacter gottschalkii Miller and Lin 2002, OCM 813, strain HO
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.