STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEL35342.1Transcriptional regulator, XRE family with cupin sensor. (205 aa)    
Predicted Functional Partners:
SEL35449.1
acetyl-CoA synthetase.
 
 0.990
SEL35507.1
2-oxoisovalerate ferredoxin oxidoreductase delta subunit/acetyl-CoA synthetase.
 
 
 0.954
SEL35556.1
2-oxoisovalerate ferredoxin oxidoreductase alpha subunit.
 
  
 0.890
SEL35604.1
2-oxoisovalerate ferredoxin oxidoreductase beta subunit.
 
  
 0.876
gatD
glutamyl-tRNA(Gln) amidotransferase subunit D; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln). The GatDE system is specific for glutamate and does not act on aspartate.
  
  
 0.792
gatE
glutamyl-tRNA(Gln) amidotransferase subunit E; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln). The GatDE system is specific for glutamate and does not act on aspartate.
       0.769
SEL35298.1
Hypothetical protein.
       0.519
SEK77571.1
Methionine adenosyltransferase.
    
 0.514
SEK78383.1
8-oxo-dGTP diphosphatase.
  
 
 0.502
SEK19319.1
Fumarate reductase (CoM/CoB) subunit A.
  
 
 0.500
Your Current Organism:
Methanobrevibacter gottschalkii
NCBI taxonomy Id: 190974
Other names: DSM 11977, M. gottschalkii, Methanobrevibacter gottschalkii Miller and Lin 2002, OCM 813, strain HO
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