STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK40407.1Transcriptional regulator, XRE family with cupin sensor. (190 aa)    
Predicted Functional Partners:
SEK40291.1
fatty-acyl-CoA synthase.
 
  
 0.825
SEK40359.1
Hypothetical protein.
       0.709
SEL35507.1
2-oxoisovalerate ferredoxin oxidoreductase delta subunit/acetyl-CoA synthetase.
 
 
 0.661
SEK77571.1
Methionine adenosyltransferase.
    
 0.514
SEK78383.1
8-oxo-dGTP diphosphatase.
  
 
 0.502
SEK19319.1
Fumarate reductase (CoM/CoB) subunit A.
  
 
 0.500
cobB
NAD-dependent deacetylase; NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form. Deacetylates the N-terminal lysine residue of Alba, the major archaeal chromatin protein and that, in turn, increases Alba's DNA binding affinity, thereby repressing transcription; Belongs to the sirtuin family. Class U subfamily.
  
 
  0.500
SEL30941.1
Nicotinamide-nucleotide adenylyltransferase.
  
 
  0.492
ilvE
Branched-chain amino acid aminotransferase; Acts on leucine, isoleucine and valine. Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.
  
 
 0.483
SEK88572.1
Nicotinate-nucleotide pyrophosphorylase [carboxylating]; Involved in the catabolism of quinolinic acid (QA). Belongs to the NadC/ModD family.
  
 
 0.483
Your Current Organism:
Methanobrevibacter gottschalkii
NCBI taxonomy Id: 190974
Other names: DSM 11977, M. gottschalkii, Methanobrevibacter gottschalkii Miller and Lin 2002, OCM 813, strain HO
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.