Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SEK29400.1 | SEK56676.1 | SAMN05216439_0762 | SAMN05216439_1130 | Prephenate dehydratase; Non-canonical start codon; manually curated. | Prephenate dehydrogenase. | 0.986 |
SEK29400.1 | SEK71962.1 | SAMN05216439_0762 | SAMN05216439_1380 | Prephenate dehydratase; Non-canonical start codon; manually curated. | Chorismate mutase. | 0.982 |
SEK29400.1 | aroA | SAMN05216439_0762 | SAMN05216439_1006 | Prephenate dehydratase; Non-canonical start codon; manually curated. | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.878 |
SEK29400.1 | aroC | SAMN05216439_0762 | SAMN05216439_1846 | Prephenate dehydratase; Non-canonical start codon; manually curated. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.849 |
SEK29400.1 | aroD | SAMN05216439_0762 | SAMN05216439_0972 | Prephenate dehydratase; Non-canonical start codon; manually curated. | 3-dehydroquinate dehydratase; Involved in the third step of the chorismate pathway, which leads to the biosynthesis of aromatic amino acids. Catalyzes the cis- dehydration of 3-dehydroquinate (DHQ) and introduces the first double bond of the aromatic ring to yield 3-dehydroshikimate. Belongs to the type-I 3-dehydroquinase family. | 0.672 |
SEK29400.1 | aroE | SAMN05216439_0762 | SAMN05216439_0626 | Prephenate dehydratase; Non-canonical start codon; manually curated. | Shikimate dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA). | 0.769 |
SEK29400.1 | hisC | SAMN05216439_0762 | SAMN05216439_1119 | Prephenate dehydratase; Non-canonical start codon; manually curated. | Histidinol-phosphate aminotransferase. | 0.982 |
SEK40291.1 | aroA | SAMN05216439_0875 | SAMN05216439_1006 | fatty-acyl-CoA synthase. | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.804 |
SEK56676.1 | SEK29400.1 | SAMN05216439_1130 | SAMN05216439_0762 | Prephenate dehydrogenase. | Prephenate dehydratase; Non-canonical start codon; manually curated. | 0.986 |
SEK56676.1 | SEK71962.1 | SAMN05216439_1130 | SAMN05216439_1380 | Prephenate dehydrogenase. | Chorismate mutase. | 0.986 |
SEK56676.1 | aroA | SAMN05216439_1130 | SAMN05216439_1006 | Prephenate dehydrogenase. | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.749 |
SEK56676.1 | aroC | SAMN05216439_1130 | SAMN05216439_1846 | Prephenate dehydrogenase. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.855 |
SEK56676.1 | aroD | SAMN05216439_1130 | SAMN05216439_0972 | Prephenate dehydrogenase. | 3-dehydroquinate dehydratase; Involved in the third step of the chorismate pathway, which leads to the biosynthesis of aromatic amino acids. Catalyzes the cis- dehydration of 3-dehydroquinate (DHQ) and introduces the first double bond of the aromatic ring to yield 3-dehydroshikimate. Belongs to the type-I 3-dehydroquinase family. | 0.780 |
SEK56676.1 | aroE | SAMN05216439_1130 | SAMN05216439_0626 | Prephenate dehydrogenase. | Shikimate dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA). | 0.769 |
SEK56676.1 | aroK | SAMN05216439_1130 | SAMN05216439_1378 | Prephenate dehydrogenase. | Shikimate kinase. | 0.484 |
SEK56676.1 | hisC | SAMN05216439_1130 | SAMN05216439_1119 | Prephenate dehydrogenase. | Histidinol-phosphate aminotransferase. | 0.970 |
SEK71962.1 | SEK29400.1 | SAMN05216439_1380 | SAMN05216439_0762 | Chorismate mutase. | Prephenate dehydratase; Non-canonical start codon; manually curated. | 0.982 |
SEK71962.1 | SEK56676.1 | SAMN05216439_1380 | SAMN05216439_1130 | Chorismate mutase. | Prephenate dehydrogenase. | 0.986 |
SEK71962.1 | aroA | SAMN05216439_1380 | SAMN05216439_1006 | Chorismate mutase. | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.954 |
SEK71962.1 | aroC | SAMN05216439_1380 | SAMN05216439_1846 | Chorismate mutase. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.994 |
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