Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SEK29724.1 | SEK34294.1 | SAMN05216439_0768 | SAMN05216439_0855 | Nucleolar protein 56. | Ribosomal RNA assembly protein. | 0.999 |
SEK29724.1 | SEK68211.1 | SAMN05216439_0768 | SAMN05216439_1312 | Nucleolar protein 56. | Nucleolar GTP-binding protein. | 0.987 |
SEK29724.1 | SEK78938.1 | SAMN05216439_0768 | SAMN05216439_1473 | Nucleolar protein 56. | Peptidyl-prolyl cis-trans isomerase B (cyclophilin B). | 0.823 |
SEK29724.1 | SEL02316.1 | SAMN05216439_0768 | SAMN05216439_1825 | Nucleolar protein 56. | ATP-dependent RNA helicase DeaD; Belongs to the DEAD box helicase family. | 0.961 |
SEK29724.1 | rpl13 | SAMN05216439_0768 | SAMN05216439_0286 | Nucleolar protein 56. | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.969 |
SEK29724.1 | rpl24 | SAMN05216439_0768 | SAMN05216439_0259 | Nucleolar protein 56. | Large subunit ribosomal protein L24; Located at the polypeptide exit tunnel on the outside of the subunit. | 0.724 |
SEK29724.1 | rpl3 | SAMN05216439_0768 | SAMN05216439_0247 | Nucleolar protein 56. | Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.611 |
SEK29724.1 | rpl7ae | SAMN05216439_0768 | SAMN05216439_0956 | Nucleolar protein 56. | Large subunit ribosomal protein L7Ae; Multifunctional RNA-binding protein that recognizes the K- turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C'/D' sRNAs. | 0.999 |
SEK29724.1 | rps9 | SAMN05216439_0768 | SAMN05216439_0287 | Nucleolar protein 56. | Small subunit ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | 0.962 |
SEK34294.1 | SEK29724.1 | SAMN05216439_0855 | SAMN05216439_0768 | Ribosomal RNA assembly protein. | Nucleolar protein 56. | 0.999 |
SEK34294.1 | SEK68211.1 | SAMN05216439_0855 | SAMN05216439_1312 | Ribosomal RNA assembly protein. | Nucleolar GTP-binding protein. | 0.733 |
SEK34294.1 | SEK78938.1 | SAMN05216439_0855 | SAMN05216439_1473 | Ribosomal RNA assembly protein. | Peptidyl-prolyl cis-trans isomerase B (cyclophilin B). | 0.724 |
SEK34294.1 | SEL02316.1 | SAMN05216439_0855 | SAMN05216439_1825 | Ribosomal RNA assembly protein. | ATP-dependent RNA helicase DeaD; Belongs to the DEAD box helicase family. | 0.949 |
SEK34294.1 | rpl13 | SAMN05216439_0855 | SAMN05216439_0286 | Ribosomal RNA assembly protein. | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.965 |
SEK34294.1 | rpl3 | SAMN05216439_0855 | SAMN05216439_0247 | Ribosomal RNA assembly protein. | Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.419 |
SEK34294.1 | rpl7ae | SAMN05216439_0855 | SAMN05216439_0956 | Ribosomal RNA assembly protein. | Large subunit ribosomal protein L7Ae; Multifunctional RNA-binding protein that recognizes the K- turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C'/D' sRNAs. | 0.986 |
SEK34294.1 | rps9 | SAMN05216439_0855 | SAMN05216439_0287 | Ribosomal RNA assembly protein. | Small subunit ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | 0.965 |
SEK68211.1 | SEK29724.1 | SAMN05216439_1312 | SAMN05216439_0768 | Nucleolar GTP-binding protein. | Nucleolar protein 56. | 0.987 |
SEK68211.1 | SEK34294.1 | SAMN05216439_1312 | SAMN05216439_0855 | Nucleolar GTP-binding protein. | Ribosomal RNA assembly protein. | 0.733 |
SEK68211.1 | SEL02316.1 | SAMN05216439_1312 | SAMN05216439_1825 | Nucleolar GTP-binding protein. | ATP-dependent RNA helicase DeaD; Belongs to the DEAD box helicase family. | 0.931 |
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