STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
API93581.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (602 aa)    
Predicted Functional Partners:
API93513.1
RNA polymerase sigma-54 factor; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.833
API93345.1
Dihydroxyacetone kinase subunit DhaK; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.744
API93346.1
Dihydroxyacetone kinase subunit L; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.744
API92952.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
   
 0.593
API93582.1
Pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.584
API93583.1
Alpha-ketoacid dehydrogenase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.491
API93584.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.468
API91600.1
D-xylose ABC transporter ATP-binding protein; With RbsBCD acts to import ribose into the cell; RbsA contains 2 ATP-binding domain; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.454
API93349.1
Carbon starvation protein A; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.441
API91611.1
Carbon starvation protein A; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.438
Your Current Organism:
Virgibacillus sp. 6R
NCBI taxonomy Id: 1911587
Other names: V. sp. 6R
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.