STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_002000085_02036Unannotated protein. (237 aa)    
Predicted Functional Partners:
GCA_002000085_02037
Unannotated protein.
       0.769
GCA_002000085_02038
Unannotated protein.
       0.769
GCA_002000085_01527
Unannotated protein.
   
    0.615
GCA_002000085_01528
Unannotated protein.
   
    0.615
GCA_002000085_02433
Unannotated protein.
  
   
 0.604
GCA_002000085_03155
Unannotated protein.
 
  
 0.577
GCA_002000085_00349
Unannotated protein.
     
 0.552
GCA_002000085_01981
Unannotated protein.
  
     0.521
GCA_002000085_01483
Unannotated protein.
  
     0.507
GCA_002000085_00413
Unannotated protein.
  
 
   0.499
Your Current Organism:
Colwellia agarivorans
NCBI taxonomy Id: 1911682
Other names: C. agarivorans, Colwellia agarivorans Xu et al. 2017, Colwellia sp. QM50, KCTC 52273, MCCC 1H00143, strain QM50
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.