STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001879695_00485Unannotated protein. (179 aa)    
Predicted Functional Partners:
GCA_001879695_00484
Unannotated protein.
 
     0.764
GCA_001879695_00482
Unannotated protein.
       0.619
GCA_001879695_00486
Unannotated protein.
       0.608
GCA_001879695_00487
Unannotated protein.
       0.604
GCA_001879695_00483
Unannotated protein.
       0.532
GCA_001879695_02908
Unannotated protein.
  
  
  0.436
GCA_001879695_03510
Unannotated protein.
   
 
  0.432
GCA_001879695_01001
Unannotated protein.
   
 
  0.430
Your Current Organism:
Nioella sediminis
NCBI taxonomy Id: 1912092
Other names: KCTC 42144, MCCC 1A00710, N. sediminis, Nioella sediminis Liu et al. 2017, Nioella sp. JS7-11, strain JS7-11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.