STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001879695_01860Unannotated protein. (131 aa)    
Predicted Functional Partners:
GCA_001879695_00035
Unannotated protein.
   
 0.790
GCA_001879695_00128
Unannotated protein.
  
 
 0.789
GCA_001879695_00114
Unannotated protein.
   
 0.762
GCA_001879695_01369
Unannotated protein.
    
  0.649
GCA_001879695_01368
Unannotated protein.
    
  0.642
GCA_001879695_01620
Unannotated protein.
  
 
  0.598
GCA_001879695_01554
Unannotated protein.
   
 0.573
GCA_001879695_01861
Unannotated protein.
       0.538
GCA_001879695_01371
Unannotated protein.
    
 0.522
GCA_001879695_00213
Unannotated protein.
     
 0.518
Your Current Organism:
Nioella sediminis
NCBI taxonomy Id: 1912092
Other names: KCTC 42144, MCCC 1A00710, N. sediminis, Nioella sediminis Liu et al. 2017, Nioella sp. JS7-11, strain JS7-11
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.