STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001879695_02249Unannotated protein. (254 aa)    
Predicted Functional Partners:
GCA_001879695_02969
Unannotated protein.
  
  
  0.913
GCA_001879695_02252
Unannotated protein.
    
  0.906
GCA_001879695_02247
Unannotated protein.
       0.873
GCA_001879695_00388
Unannotated protein.
  
 
 0.871
GCA_001879695_03792
Unannotated protein.
     
 0.862
GCA_001879695_00095
Unannotated protein.
    
  0.859
GCA_001879695_02547
Unannotated protein.
    
  0.859
GCA_001879695_02883
Unannotated protein.
  
 
 0.856
GCA_001879695_03860
Unannotated protein.
   
 
  0.856
GCA_001879695_02968
Unannotated protein.
  
 
  0.834
Your Current Organism:
Nioella sediminis
NCBI taxonomy Id: 1912092
Other names: KCTC 42144, MCCC 1A00710, N. sediminis, Nioella sediminis Liu et al. 2017, Nioella sp. JS7-11, strain JS7-11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.