STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001879695_02604Unannotated protein. (420 aa)    
Predicted Functional Partners:
GCA_001879695_02603
Unannotated protein.
 
   
 0.929
GCA_001879695_01243
Unannotated protein.
  
  
 0.646
GCA_001879695_03245
Unannotated protein.
 
    0.629
GCA_001879695_01085
Unannotated protein.
    
   0.627
GCA_001879695_00469
Unannotated protein.
 
  
 0.616
GCA_001879695_03332
Unannotated protein.
  
   
 0.573
GCA_001879695_02162
Unannotated protein.
     
 0.531
GCA_001879695_02605
Unannotated protein.
       0.469
GCA_001879695_02608
Unannotated protein.
       0.461
GCA_001879695_02540
Unannotated protein.
 
     0.455
Your Current Organism:
Nioella sediminis
NCBI taxonomy Id: 1912092
Other names: KCTC 42144, MCCC 1A00710, N. sediminis, Nioella sediminis Liu et al. 2017, Nioella sp. JS7-11, strain JS7-11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.