STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKE92454.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (154 aa)    
Predicted Functional Partners:
AKE88519.1
Extradiol dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.918
AKE91481.1
Extradiol dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.918
AKE89945.1
Urea amidolyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.694
AKE91125.1
Urea carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.694
AKE89369.1
Flavin-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.625
AKE89368.1
Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.586
AKE88907.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.528
AKE91868.1
Benzene 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.512
AKE88462.1
Allophanate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.441
AKE89294.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.435
Your Current Organism:
Rhodococcus aetherivorans
NCBI taxonomy Id: 191292
Other names: DSM 44752, JCM 14343, NCIMB 13964, R. aetherivorans, Rhodococcus aetherivorans Goodfellow et al. 2004, Rhodococcus sp. BCP1, Rhodococcus sp. IAR1, strain 10bc312
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