STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKE89532.1Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (277 aa)    
Predicted Functional Partners:
AKE89531.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.971
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
       0.673
argS
arginyl-tRNA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.666
AKE92480.1
Homoserine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.663
AKE89535.1
Threonine synthase; Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine.
       0.662
AKE89556.1
Myosin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.638
AKE92690.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.635
thrB
Serine kinase; Catalyzes the ATP-dependent phosphorylation of L-homoserine to L-homoserine phosphate; Belongs to the GHMP kinase family. Homoserine kinase subfamily.
       0.628
AKE92117.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.627
AKE89932.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.611
Your Current Organism:
Rhodococcus aetherivorans
NCBI taxonomy Id: 191292
Other names: DSM 44752, JCM 14343, NCIMB 13964, R. aetherivorans, Rhodococcus aetherivorans Goodfellow et al. 2004, Rhodococcus sp. BCP1, Rhodococcus sp. IAR1, strain 10bc312
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.