STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OMH40016.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (302 aa)    
Predicted Functional Partners:
OMH40015.1
Coenzyme F420 hydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.998
OMH40014.1
Coenzyme F420 hydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.991
OMH40942.1
Hydrogenase 2 large subunit; Involved in hydrogen uptake; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.
  
 0.976
OMH41325.1
NADH:ubiquinone oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.928
OMH40017.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
mfd
Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily.
       0.741
OMH41099.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.715
OMH39911.1
Heterodisulfide reductase subunit B; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.715
OMH41388.1
Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.699
OMH40937.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.692
Your Current Organism:
Desulfurobacterium indicum
NCBI taxonomy Id: 1914305
Other names: D. indicum, DSM 101677, Desulfurobacterium indicum Cao et al. 2017, Desulfurobacterium sp. K6013, MCCC 1A01868, strain K6013
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.