STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KYG79953.1Iron-regulated protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (284 aa)    
Predicted Functional Partners:
KYG79952.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.541
KYG84467.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
  0.529
KYG84520.1
DNA mismatch repair protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.426
KYG84593.1
Aminoacyl peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.410
KYG85745.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.407
Your Current Organism:
Roseivirga seohaensis
NCBI taxonomy Id: 1914963
Other names: JCM 12600, KCTC 12312, Marinicola seohaensis, Marinicola seohaensis Yoon et al. 2005, R. seohaensis, Roseivirga seohaensis (Yoon et al. 2005) Lau et al. 2006, strain SW-152
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.