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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ANS64376.1Pectate lyase. (276 aa)    
Predicted Functional Partners:
ANS66191.1
Hypothetical protein.
  
  
 0.845
ANS64388.1
Pectinesterase.
 
  
 0.829
ANS64384.1
Secreted pectinesterase.
 
  
 0.808
ANS64383.1
Pectinesterase.
 
  
 0.807
ANS64374.1
RNA polymerase ECF-subfamily sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
    0.790
ANS64375.1
Hypothetical protein.
       0.787
ANS63542.1
Glycoside hydrolase family 62.
 
     0.773
ANS70317.1
Endo-1,4-beta-xylanase; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
  
   
 0.766
ANS68866.1
Rhamnogalacturonase B precursor.
 
  
 0.747
ANS68957.1
Secreted cellulase B precursor; Belongs to the glycosyl hydrolase 12 (cellulase H) family.
 
 
 0.726
Your Current Organism:
Streptomyces lincolnensis
NCBI taxonomy Id: 1915
Other names: ATCC 25466, BCRC 11173, CBS 630.70, CBS 699.69, CCRC 11173, CCRC:11173, DSM 2013, DSM 40355, IFO 13054, ISP 5355, JCM 4287, JCM 4488, KCTC 9088, KCTC 9089, NBRC 13054, NCIMB 9413, NRRL 2936, NRRL-ISP 5355, S. lincolnensis, VKM Ac-727
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