STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yciKPutative oxidoreductase YciK. (236 aa)    
Predicted Functional Partners:
gltB
Glutamate synthase large chain precursor.
    
  0.891
lvr
Levodione reductase.
  
 
  0.778
fabG_5
3-oxoacyl-[acyl-carrier-protein] reductase FabG; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
  
  0.773
fabG_3
3-oxoacyl-[acyl-carrier-protein] reductase FabG.
  
 
  0.747
xecE
2-(S)-hydroxypropyl-CoM dehydrogenase.
  
 
  0.744
gno_2
Gluconate 5-dehydrogenase.
  
 
  0.741
purF
Amidophosphoribosyltransferase precursor; Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine.
       0.738
fabG_8
3-oxoacyl-[acyl-carrier-protein] reductase FabG.
  
 
  0.717
budC_1
Diacetyl reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
  
  0.704
ONF95805.1
Putative oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
  
  0.697
Your Current Organism:
Sphingomonas jeddahensis
NCBI taxonomy Id: 1915074
Other names: DSM 103790, LMG 29955, LMG:29955, S. jeddahensis, Sphingomonas jeddahensis Wubbeler et al. 2017, Sphingomonas sp. G39, strain G39
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