STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OOY11625.1glycine--tRNA ligase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology. (772 aa)    
Predicted Functional Partners:
OOY11628.1
glycine--tRNA ligase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.999
OOY11626.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
      0.942
OOY11868.1
valine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.828
BMG00_14120
Hypothetical protein; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.816
OOY13715.1
leucine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.801
OOY10966.1
proline--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.734
OOY12501.1
alanine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.647
OOY12133.1
tRNA (guanosine(37)-N1)-methyltransferase TrmD; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.621
OOY11023.1
UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.598
OOY11624.1
Pyruvate, phosphate dikinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.590
Your Current Organism:
Thioclava marina
NCBI taxonomy Id: 1915077
Other names: LMG 29618, LMG:29618, MCCC 1A03502, T. marina, Thioclava marina corrig. Liu et al. 2017, Thioclava marinus, Thioclava sp. 11.10-0-13, strain 11.10-0-13
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