STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AXG55_00865PBPb domain-containing protein; Belongs to the bacterial solute-binding protein 3 family. (278 aa)    
Predicted Functional Partners:
AXG55_07495
Amino acid ABC transporter permease.
 
 0.918
AXG55_07490
ABC transporter permease.
 
 0.909
AXG55_07480
Polar amino acid ABC transporter ATP-binding protein.
 0.903
AXG55_06385
ABC transmembrane type-1 domain-containing protein.
 
 0.900
AXG55_06390
ABC transporter domain-containing protein.
 0.862
glnQ
Glutamine ABC transporter ATP-binding protein.
 0.857
AXG55_03125
PBPb domain-containing protein.
  
     0.759
AXG55_02410
PBPb domain-containing protein.
  
     0.758
AXG55_06380
PBPb domain-containing protein.
  
     0.756
AXG55_02835
PBPb domain-containing protein.
  
     0.753
Your Current Organism:
Silvanigrella aquatica
NCBI taxonomy Id: 1915309
Other names: CCUG 58639, DSM 23856, Oligoflexia bacterium MWH-Nonnen-W8red, Proteobacteria bacterium Nonnen-W8red, S. aquatica, Silvanigrella aquatica Hahn et al. 2017, strain MWH-Nonnen-W8red
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.