STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AXG55_01975Elp3 domain-containing protein. (415 aa)    
Predicted Functional Partners:
AXG55_01970
Uncharacterized protein.
 
    
0.825
AXG55_01985
JmjC domain-containing protein.
  
    0.774
AXG55_01980
Uncharacterized protein.
       0.773
AXG55_10290
Uncharacterized protein.
    
  0.735
AXG55_01990
Uncharacterized protein.
       0.732
AXG55_14125
Uncharacterized protein.
  
  
 0.729
AXG55_07380
Ribonucleoside-diphosphate reductase; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.
    
  0.664
AXG55_01200
HD-GYP domain-containing protein.
    
  0.638
AXG55_01995
Uncharacterized protein.
       0.594
AXG55_08785
ThiF domain-containing protein.
 
   
 0.575
Your Current Organism:
Silvanigrella aquatica
NCBI taxonomy Id: 1915309
Other names: CCUG 58639, DSM 23856, Oligoflexia bacterium MWH-Nonnen-W8red, Proteobacteria bacterium Nonnen-W8red, S. aquatica, Silvanigrella aquatica Hahn et al. 2017, strain MWH-Nonnen-W8red
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