STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AXG55_03670MFS transporter. (515 aa)    
Predicted Functional Partners:
AXG55_08120
MFS domain-containing protein.
  
     0.773
AXG55_14080
Uncharacterized protein.
     
 0.613
AXG55_06230
MFS domain-containing protein.
  
  
0.583
AXG55_06235
MFS domain-containing protein.
  
  
0.583
rpmE
50S ribosomal protein L31; Binds the 23S rRNA.
   
    0.568
AXG55_13655
Uncharacterized protein; Belongs to the ATP-dependent AMP-binding enzyme family.
    
 0.550
AXG55_03300
Uncharacterized protein.
   
    0.525
AXG55_13885
MFS domain-containing protein.
  
     0.524
AXG55_02175
Chorismate_bind domain-containing protein.
  
 
 0.520
AXG55_11805
Cystathionine beta-lyase.
  
 
 0.515
Your Current Organism:
Silvanigrella aquatica
NCBI taxonomy Id: 1915309
Other names: CCUG 58639, DSM 23856, Oligoflexia bacterium MWH-Nonnen-W8red, Proteobacteria bacterium Nonnen-W8red, S. aquatica, Silvanigrella aquatica Hahn et al. 2017, strain MWH-Nonnen-W8red
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.