STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AXG55_04920Type II secretion system protein GspD. (811 aa)    
Predicted Functional Partners:
AXG55_04925
Uncharacterized protein.
 
 
 0.996
AXG55_04930
PDZ domain-containing protein.
 
 
 0.996
AXG55_04910
Uncharacterized protein.
 
  
 0.947
AXG55_04905
T2SSG domain-containing protein.
 
  
 0.931
AXG55_04915
AAA domain-containing protein.
 
  
 0.929
AXG55_03715
Uncharacterized protein.
 
 
 0.772
AXG55_12460
Uncharacterized protein.
  
 
 0.740
AXG55_04935
PAS domain-containing protein.
  
    0.739
AXG55_13855
Uncharacterized protein.
  
  
 0.720
AXG55_01055
Type 4 prepilin-like proteins leader peptide-processing enzyme; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
   
 0.684
Your Current Organism:
Silvanigrella aquatica
NCBI taxonomy Id: 1915309
Other names: CCUG 58639, DSM 23856, Oligoflexia bacterium MWH-Nonnen-W8red, Proteobacteria bacterium Nonnen-W8red, S. aquatica, Silvanigrella aquatica Hahn et al. 2017, strain MWH-Nonnen-W8red
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