STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AXG55_06000SBP_bac_5 domain-containing protein. (550 aa)    
Predicted Functional Partners:
oppB
Oligopeptide transporter permease.
 
 0.787
AXG55_05285
Peptide ABC transporter permease.
 
 0.778
AXG55_13010
ABC transmembrane type-1 domain-containing protein.
  
 0.748
AXG55_13015
ABC transmembrane type-1 domain-containing protein.
  
 0.730
AXG55_06005
Uncharacterized protein.
       0.661
AXG55_08625
SBP_bac_5 domain-containing protein.
 
 
 0.654
AXG55_05295
SBP_bac_5 domain-containing protein.
 
 
 0.645
AXG55_05865
SBP_bac_5 domain-containing protein.
 
 
 0.642
AXG55_08345
SBP_bac_5 domain-containing protein.
 
 
 0.628
AXG55_05275
Oligopeptide ABC transporter ATP-binding protein OppF; Belongs to the ABC transporter superfamily.
  
 
 0.609
Your Current Organism:
Silvanigrella aquatica
NCBI taxonomy Id: 1915309
Other names: CCUG 58639, DSM 23856, Oligoflexia bacterium MWH-Nonnen-W8red, Proteobacteria bacterium Nonnen-W8red, S. aquatica, Silvanigrella aquatica Hahn et al. 2017, strain MWH-Nonnen-W8red
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.