AXG55_06510 protein (Silvanigrella aquatica)

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

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Score

AXG55_06510

PBPb domain-containing protein. (232 aa)

Predicted Functional Partners:

AXG55_06035

0.775

AXG55_07125

0.775

AXG55_07460

0.775

AXG55_07765

0.775

AXG55_08255

0.774

AXG55_10085

0.774

AXG55_04385

0.771

AXG55_06930

0.770

AXG55_12505

0.770

AXG55_08035

0.765

Your Current Organism:

Silvanigrella aquatica

NCBI taxonomy Id: 1915309
Other names: CCUG 58639, DSM 23856, Oligoflexia bacterium MWH-Nonnen-W8red, Proteobacteria bacterium Nonnen-W8red, S. aquatica, Silvanigrella aquatica Hahn et al. 2017, strain MWH-Nonnen-W8red

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Browse interactions in tabular form:

page 1 of 5

Network Stats

number of nodes:

11

number of edges:

44

average node degree:

8

avg. local clustering coefficient:

0.849

expected number of edges:

12

PPI enrichment p-value:

7.06e-13

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
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Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0009089

Lysine biosynthetic process via diaminopimelate

5 of 13

2.08

3.2

1.53e-07

GO:1901607

Alpha-amino acid biosynthetic process

9 of 95

1.47

2.55

5.01e-10

GO:1901605

Alpha-amino acid metabolic process

10 of 125

1.4

2.41

8.55e-11

GO:0006526

Arginine biosynthetic process

4 of 13

1.98

2.4

9.23e-06

GO:0019877

Diaminopimelate biosynthetic process

2 of 9

1.84

0.87

0.0210

(more ...)

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0030170

Pyridoxal phosphate binding

4 of 29

1.63

1.3

0.0015

GO:0008483

Transaminase activity

3 of 18

1.71

1.11

0.0054

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:1103

Lysine biosynthesis, and Arginine biosynthesis

10 of 18

2.24

7.4

1.84e-18

CL:1105

Lysine biosynthesis, and Peptidase family M20/M25/M40

4 of 8

2.19

2.69

4.38e-06

CL:1124

Arginine biosynthesis

3 of 5

2.27

1.96

0.00018

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map00300

Lysine biosynthesis

7 of 22

1.99

4.36

2.92e-11

map00220

Arginine biosynthesis

5 of 21

1.87

2.82

3.18e-07

map01230

Biosynthesis of amino acids

11 of 145

1.37

2.57

1.56e-13

map01210

2-Oxocarboxylic acid metabolism

4 of 27

1.66

1.82

5.50e-05

map01110

Biosynthesis of secondary metabolites

8 of 508

0.69

0.57

0.00069

(more ...)

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0055

Arginine biosynthesis

4 of 9

2.14

2.65

4.34e-06

KW-0028

Amino-acid biosynthesis

7 of 63

1.54

2.37

7.25e-08

KW-0457

Lysine biosynthesis

3 of 6

2.19

1.97

0.00015

KW-0032

Aminotransferase

3 of 13

1.86

1.53

0.00072

KW-0963

Cytoplasm

6 of 226

0.92

0.75

0.0013

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node1	node2	node1 annotation	node2 annotation	score
AXG55_04385	AXG55_06035	PBPb domain-containing protein.	PBPb domain-containing protein.	0.761
AXG55_04385	AXG55_06510	PBPb domain-containing protein.	PBPb domain-containing protein.	0.771
AXG55_04385	AXG55_07125	PBPb domain-containing protein.	PBPb domain-containing protein.	0.767
AXG55_04385	AXG55_07460	PBPb domain-containing protein.	PBPb domain-containing protein.	0.769
AXG55_04385	AXG55_07765	PBPb domain-containing protein.	PBPb domain-containing protein.	0.766
AXG55_04385	AXG55_08255	PBPb domain-containing protein.	PBPb domain-containing protein.	0.767
AXG55_04385	AXG55_10085	PBPb domain-containing protein.	Uncharacterized protein.	0.752
AXG55_04385	AXG55_12505	PBPb domain-containing protein.	PBPb domain-containing protein.	0.751
AXG55_06035	AXG55_04385	PBPb domain-containing protein.	PBPb domain-containing protein.	0.761
AXG55_06035	AXG55_06510	PBPb domain-containing protein.	PBPb domain-containing protein.	0.775
AXG55_06035	AXG55_06930	PBPb domain-containing protein.	PBPb domain-containing protein.	0.763
AXG55_06035	AXG55_08035	PBPb domain-containing protein.	PBPb domain-containing protein.	0.741
AXG55_06035	AXG55_08255	PBPb domain-containing protein.	PBPb domain-containing protein.	0.773
AXG55_06035	AXG55_10085	PBPb domain-containing protein.	Uncharacterized protein.	0.773
AXG55_06035	AXG55_12505	PBPb domain-containing protein.	PBPb domain-containing protein.	0.765
AXG55_06510	AXG55_04385	PBPb domain-containing protein.	PBPb domain-containing protein.	0.771
AXG55_06510	AXG55_06035	PBPb domain-containing protein.	PBPb domain-containing protein.	0.775
AXG55_06510	AXG55_06930	PBPb domain-containing protein.	PBPb domain-containing protein.	0.770
AXG55_06510	AXG55_07125	PBPb domain-containing protein.	PBPb domain-containing protein.	0.775
AXG55_06510	AXG55_07460	PBPb domain-containing protein.	PBPb domain-containing protein.	0.775