STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AXG55_06695HAMP domain-containing protein. (680 aa)    
Predicted Functional Partners:
AXG55_06935
Uncharacterized protein.
 
 
 0.935
AXG55_10900
HPt domain-containing protein.
  
 
 0.927
AXG55_00965
HPt domain-containing protein.
  
 
 0.903
AXG55_00110
Uncharacterized protein.
  
 0.897
AXG55_11130
Uncharacterized protein.
  
 0.897
AXG55_03725
Uncharacterized protein.
 
 
 0.868
AXG55_12070
Response regulatory domain-containing protein.
  
 
 0.851
AXG55_01200
HD-GYP domain-containing protein.
  
 
 0.784
AXG55_05950
HDOD domain-containing protein.
 
 
 0.760
AXG55_11780
Uncharacterized protein.
    
  0.730
Your Current Organism:
Silvanigrella aquatica
NCBI taxonomy Id: 1915309
Other names: CCUG 58639, DSM 23856, Oligoflexia bacterium MWH-Nonnen-W8red, Proteobacteria bacterium Nonnen-W8red, S. aquatica, Silvanigrella aquatica Hahn et al. 2017, strain MWH-Nonnen-W8red
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.