STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AXG55_08165Uncharacterized protein. (142 aa)    
Predicted Functional Partners:
AXG55_04015
Carrier domain-containing protein.
  
 0.995
AXG55_04020
Uncharacterized protein.
  
 0.926
AXG55_03160
Malonyl CoA-acyl carrier protein transacylase.
  
 0.904
AXG55_03745
Uncharacterized protein; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 
 0.878
AXG55_13655
Uncharacterized protein; Belongs to the ATP-dependent AMP-binding enzyme family.
  
 0.804
AXG55_02760
3-hydroxyacyl-CoA dehydrogenase.
  
 
 0.767
AXG55_01785
RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
    
   0.763
secA
Protein translocase subunit SecA; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane.
   
   0.759
AXG55_05700
Flagellar motor switch protein FliG.
    
   0.729
AXG55_07595
Uncharacterized protein.
    
   0.729
Your Current Organism:
Silvanigrella aquatica
NCBI taxonomy Id: 1915309
Other names: CCUG 58639, DSM 23856, Oligoflexia bacterium MWH-Nonnen-W8red, Proteobacteria bacterium Nonnen-W8red, S. aquatica, Silvanigrella aquatica Hahn et al. 2017, strain MWH-Nonnen-W8red
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.