STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AXG55_12480Uncharacterized protein. (299 aa)    
Predicted Functional Partners:
AXG55_09445
Isoprenyl transferase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
 
  
 0.554
AXG55_12285
Uncharacterized protein.
 
     0.533
AXG55_00905
Peptidase_M24 domain-containing protein; Belongs to the peptidase M24B family.
    
 0.510
bioD
ATP-dependent dethiobiotin synthetase BioD; Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8- diaminopelargonic acid (DAPA) to form an ureido ring.
  
 
  0.494
AXG55_10500
Uncharacterized protein.
 
     0.492
AXG55_09140
Uncharacterized protein; Belongs to the FPP/GGPP synthase family.
    
  0.472
AXG55_09765
Uncharacterized protein; Belongs to the FPP/GGPP synthase family.
    
  0.472
AXG55_14330
Uncharacterized protein; Belongs to the FPP/GGPP synthase family.
    
  0.472
AXG55_12845
Uncharacterized protein.
  
  
 0.467
AXG55_12485
Peptidase_S8 domain-containing protein.
       0.439
Your Current Organism:
Silvanigrella aquatica
NCBI taxonomy Id: 1915309
Other names: CCUG 58639, DSM 23856, Oligoflexia bacterium MWH-Nonnen-W8red, Proteobacteria bacterium Nonnen-W8red, S. aquatica, Silvanigrella aquatica Hahn et al. 2017, strain MWH-Nonnen-W8red
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