STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APE07565.1GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (982 aa)    
Predicted Functional Partners:
APE07719.1
Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.915
APE06329.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
 0.903
APE04509.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
0.835
APE06984.1
GGDEF-domain containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
0.834
APE04700.1
Two-component system sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.826
APE05634.1
Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.817
APE06213.1
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
0.813
APE05784.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
0.808
APE06824.1
Aerobic respiration two-component sensor histidine kinase ArcB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.783
APE06225.1
Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.781
Your Current Organism:
Alteromonas sp. RW2A1
NCBI taxonomy Id: 1917158
Other names: A. sp. RW2A1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.