STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APE06770.1Twitching motility protein PilT; Derived by automated computational analysis using gene prediction method: Protein Homology. (347 aa)    
Predicted Functional Partners:
APE06728.1
Prepilin peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.853
APE04720.1
Pilus assembly protein PilM; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.823
APE06727.1
Type II secretion system protein F; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.814
APE07336.1
Type II secretion system protein GspF; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.808
APE04716.1
Secretin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.760
APE06769.1
Type IV pili twitching motility protein PilT; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
0.721
APE07480.1
General secretion pathway protein GspE; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
0.665
APE07335.1
Type II secretion system protein GspE; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
0.659
APE06771.1
YggS family pyridoxal phosphate enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.647
APE04718.1
Pilus assembly protein PilP; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.619
Your Current Organism:
Alteromonas sp. RW2A1
NCBI taxonomy Id: 1917158
Other names: A. sp. RW2A1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.