STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BOO69_07860ABC transporter substrate-binding protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology. (261 aa)    
Predicted Functional Partners:
APE44429.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 0.990
APE44194.1
succinyl-CoA--3-ketoacid-CoA transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.937
APE44193.1
succinyl-CoA--3-ketoacid-CoA transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.932
APE43113.1
hydroxymethylglutaryl-CoA lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.920
APE42535.1
acetoacetate--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.916
APE43340.1
Patatin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.851
APE42936.1
Class I poly(R)-hydroxyalkanoic acid synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.678
APE44428.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
  
 0.674
APE42971.1
Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.604
APE42970.1
Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.599
Your Current Organism:
Sulfitobacter sp. AM1D1
NCBI taxonomy Id: 1917485
Other names: S. sp. AM1-D1, Sulfitobacter sp. AM1-D1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.