STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDB95781.1Biotin--[acetyl-CoA-carboxylase] ligase; BirA family transcriptional regulator, biotin operon repressor / biotin-[acetyl-CoA-carboxylase] ligase. (333 aa)    
Predicted Functional Partners:
SDC63102.1
acetyl-CoA carboxylase, biotin carboxylase subunit.
  
 0.994
tadA
tRNA(adenine34) deaminase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
 
    0.986
tsaB
tRNA threonylcarbamoyladenosine biosynthesis protein TsaB.
 
    0.983
SDC13625.1
Pyruvate carboxylase.
 
 0.979
accB
acetyl-CoA carboxylase biotin carboxyl carrier protein.
   
 
 0.950
SDC83309.1
Glycine C-acetyltransferase.
  
 
 0.948
xth
Exodeoxyribonuclease-3.
  
    0.920
SDD24587.1
Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein.
   
 
 0.919
SDC25940.1
tRNA nucleotidyltransferase (CCA-adding enzyme).
 
  
 0.908
SDC41958.1
Nitroreductase.
  
  
 0.879
Your Current Organism:
Marinilactibacillus psychrotolerans
NCBI taxonomy Id: 191770
Other names: DSM 19582, IAM 14980, JCM 21451, M. psychrotolerans, Marinilactibacillus psychrotolerans Ishikawa et al. 2003, Marinolactobacillus psychrotolerans, NBRC 100002, NCIMB 13873, NRIC 0510, strain M13-2
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