STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDB97652.1DNA replication and repair protein RadC. (229 aa)    
Predicted Functional Partners:
mreC
Rod shape-determining protein MreC.
  
  
 0.756
SDD03903.1
Competence protein ComFC.
 
    0.725
SDC02514.1
Nicotinamide-nucleotide amidase.
     
 0.636
SDB97730.1
valyl-tRNA synthetase.
     
 0.583
mutL
DNA mismatch repair protein MutL.
 
   
 0.581
SDB97691.1
HAD family phosphatase; Haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E.
       0.564
SDB96141.1
Competence protein ComEC.
  
  
 0.551
mutS
DNA mismatch repair protein MutS.
 
   
 0.546
dprA
DNA processing protein.
   
  
 0.482
SDD46598.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
    0.452
Your Current Organism:
Marinilactibacillus psychrotolerans
NCBI taxonomy Id: 191770
Other names: DSM 19582, IAM 14980, JCM 21451, M. psychrotolerans, Marinilactibacillus psychrotolerans Ishikawa et al. 2003, Marinolactobacillus psychrotolerans, NBRC 100002, NCIMB 13873, NRIC 0510, strain M13-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.