SDC25190.1 protein (Marinilactibacillus psychrotolerans)

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second shell of interactors

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proteins of unknown 3D structure

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a 3D structure is known or predicted

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Edges represent protein-protein associations

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Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

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[Homology]

Score

SDC25190.1

Protein of unknown function. (258 aa)

Predicted Functional Partners:

SDC52185.1

0.733

SDC26027.1

0.716

SDC52145.1

0.715

SDC72552.1

0.651

SDC77584.1

0.651

SDD29481.1

0.651

SDC00863.1

0.627

SDC97519.1

0.613

SDC15174.1

0.595

SDC13165.1

0.555

Your Current Organism:

Marinilactibacillus psychrotolerans

NCBI taxonomy Id: 191770
Other names: DSM 19582, IAM 14980, JCM 21451, M. psychrotolerans, Marinilactibacillus psychrotolerans Ishikawa et al. 2003, Marinolactobacillus psychrotolerans, NBRC 100002, NCIMB 13873, NRIC 0510, strain M13-2

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SDC00863.1	SDC25190.1	SAMN04488013_101175	SAMN04488013_103128	Replicative DNA helicase loader DnaB.	Protein of unknown function.	0.627
SDC00863.1	SDC26027.1	SAMN04488013_101175	SAMN04488013_103148	Replicative DNA helicase loader DnaB.	Uncharacterized protein YpiB, UPF0302 family; Belongs to the UPF0302 family.	0.556
SDC00863.1	SDC52145.1	SAMN04488013_101175	SAMN04488013_10638	Replicative DNA helicase loader DnaB.	Two-component signal transduction system YycFG, regulatory protein YycH.	0.748
SDC00863.1	SDC52185.1	SAMN04488013_101175	SAMN04488013_10639	Replicative DNA helicase loader DnaB.	Two-component signal transduction system YycFG, regulatory protein YycI.	0.693
SDC00863.1	SDC77584.1	SAMN04488013_101175	SAMN04488013_10954	Replicative DNA helicase loader DnaB.	Uncharacterized membrane-anchored protein.	0.576
SDC00863.1	SDC97519.1	SAMN04488013_101175	SAMN04488013_11330	Replicative DNA helicase loader DnaB.	DNA-binding transcriptional regulator, GntR family.	0.485
SDC13165.1	SDC25190.1	SAMN04488013_102123	SAMN04488013_103128	Zinc transport system ATP-binding protein.	Protein of unknown function.	0.555
SDC13165.1	SDC77584.1	SAMN04488013_102123	SAMN04488013_10954	Zinc transport system ATP-binding protein.	Uncharacterized membrane-anchored protein.	0.509
SDC15174.1	SDC25190.1	SAMN04488013_102162	SAMN04488013_103128	Cell division protein DivIC.	Protein of unknown function.	0.595
SDC15174.1	SDC26027.1	SAMN04488013_102162	SAMN04488013_103148	Cell division protein DivIC.	Uncharacterized protein YpiB, UPF0302 family; Belongs to the UPF0302 family.	0.566
SDC15174.1	SDC52145.1	SAMN04488013_102162	SAMN04488013_10638	Cell division protein DivIC.	Two-component signal transduction system YycFG, regulatory protein YycH.	0.561
SDC15174.1	SDC52185.1	SAMN04488013_102162	SAMN04488013_10639	Cell division protein DivIC.	Two-component signal transduction system YycFG, regulatory protein YycI.	0.470
SDC25190.1	SDC00863.1	SAMN04488013_103128	SAMN04488013_101175	Protein of unknown function.	Replicative DNA helicase loader DnaB.	0.627
SDC25190.1	SDC13165.1	SAMN04488013_103128	SAMN04488013_102123	Protein of unknown function.	Zinc transport system ATP-binding protein.	0.555
SDC25190.1	SDC15174.1	SAMN04488013_103128	SAMN04488013_102162	Protein of unknown function.	Cell division protein DivIC.	0.595
SDC25190.1	SDC26027.1	SAMN04488013_103128	SAMN04488013_103148	Protein of unknown function.	Uncharacterized protein YpiB, UPF0302 family; Belongs to the UPF0302 family.	0.716
SDC25190.1	SDC52145.1	SAMN04488013_103128	SAMN04488013_10638	Protein of unknown function.	Two-component signal transduction system YycFG, regulatory protein YycH.	0.715
SDC25190.1	SDC52185.1	SAMN04488013_103128	SAMN04488013_10639	Protein of unknown function.	Two-component signal transduction system YycFG, regulatory protein YycI.	0.733
SDC25190.1	SDC72552.1	SAMN04488013_103128	SAMN04488013_108110	Protein of unknown function.	Arabinogalactan oligomer / maltooligosaccharide transport system permease protein.	0.651
SDC25190.1	SDC77584.1	SAMN04488013_103128	SAMN04488013_10954	Protein of unknown function.	Uncharacterized membrane-anchored protein.	0.651

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Network Stats

number of nodes:

11

number of edges:

34

average node degree:

6.18

avg. local clustering coefficient:

0.88

expected number of edges:

10

PPI enrichment p-value:

5.18e-09

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0006777

Mo-molybdopterin cofactor biosynthetic process

3 of 10

1.85

0.92

0.0167

GO:0042128

Nitrate assimilation

2 of 2

2.37

0.92

0.0205

GO:0015886

Heme transport

2 of 3

2.19

0.91

0.0205

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0020037

Heme binding

3 of 5

2.15

1.44

0.0018

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:3706

Mixed, incl. Molybdopterin cofactor metabolic process, and Nitrogen metabolism

8 of 17

2.04

4.83

2.19e-12

CL:3725

Molybdopterin cofactor metabolic process

3 of 7

2.0

1.56

0.00082

CL:3709

Nitrate assimilation, and Nitrogen metabolism

2 of 5

1.97

0.78

0.0343

CL:3056

Heme transport, and ABC transporter, permease protein, BtuC-like

2 of 5

1.97

0.78

0.0343

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map02010

ABC transporters

6 of 159

0.94

0.74

0.0024

Protein Domains (Pfam)

domain

description

count in network

strength

signal

false discovery rate

PF01497

Periplasmic binding protein

2 of 2

2.37

0.77

0.0389

PF00950

ABC 3 transport family

2 of 3

2.19

0.76

0.0389

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