STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
recURecombination protein U. (207 aa)    
Predicted Functional Partners:
gpsB
DivIVA domain-containing protein.
 
   
 0.861
SDC19132.1
Penicillin-binding protein 1A.
  
 0.795
SDC64171.1
Hypothetical protein.
  
     0.769
SDB97875.1
Septation ring formation regulator.
  
   
 0.721
recJ
single-stranded-DNA-specific exonuclease.
   
  
 0.709
SDC19232.1
Uncharacterized SPBc2 prophage-derived protein YoqJ.
 
  
 0.689
SDB98880.1
Cell division protein FtsQ.
  
    0.604
SDB97330.1
Site-specific DNA-methyltransferase (adenine-specific).
  
     0.604
yjbK
Uncharacterized protein YjbK.
  
     0.584
SDC01858.1
Phosphoesterase RecJ domain-containing protein.
  
     0.568
Your Current Organism:
Marinilactibacillus psychrotolerans
NCBI taxonomy Id: 191770
Other names: DSM 19582, IAM 14980, JCM 21451, M. psychrotolerans, Marinilactibacillus psychrotolerans Ishikawa et al. 2003, Marinolactobacillus psychrotolerans, NBRC 100002, NCIMB 13873, NRIC 0510, strain M13-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.