STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDC40571.1ABC-2 type transport system ATP-binding protein. (283 aa)    
Predicted Functional Partners:
SDC40617.1
GntR family transcriptional regulator.
  
 0.967
SDC40522.1
ABC-2 family transporter protein.
 
     0.943
SDD16261.1
DNA-binding transcriptional regulator YhcF, GntR family.
 
  
 0.858
SDC42047.1
ABC-2 type transport system permease protein.
  
 
 0.631
SDC79674.1
ABC-2 type transport system permease protein.
  
 0.625
SDD00347.1
Hypothetical protein.
  
 0.625
SDD00080.1
ABC-2 type transport system permease protein.
  
 0.591
SDC76623.1
Peptide/nickel transport system permease protein.
    
 0.513
SDC54113.1
X-X-X-Leu-X-X-Gly heptad repeat-containing protein.
 
  
 0.489
SDC93240.1
ABC-2 type transport system permease protein.
  
 
 0.489
Your Current Organism:
Marinilactibacillus psychrotolerans
NCBI taxonomy Id: 191770
Other names: DSM 19582, IAM 14980, JCM 21451, M. psychrotolerans, Marinilactibacillus psychrotolerans Ishikawa et al. 2003, Marinolactobacillus psychrotolerans, NBRC 100002, NCIMB 13873, NRIC 0510, strain M13-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.