STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDC40000.1NUDIX domain-containing protein. (140 aa)    
Predicted Functional Partners:
SDC02514.1
Nicotinamide-nucleotide amidase.
    
 0.884
pyk
Pyruvate kinase.
  
 
  0.884
guaA
GMP synthase (glutamine-hydrolysing).
    
  0.814
SDC77539.1
IMP dehydrogenase.
    
  0.806
SDC39956.1
Protein of unknown function.
       0.561
polA
DNA polymerase I.
  
  
 0.545
SDD37823.1
phosphoribosyl-ATP pyrophosphatase.
     
 0.537
SDC54726.1
AAA domain-containing protein.
 
     0.532
SDC40040.1
Protein of unknown function.
       0.517
SDD19635.1
XTP/dITP diphosphohydrolase.
  
 
 0.517
Your Current Organism:
Marinilactibacillus psychrotolerans
NCBI taxonomy Id: 191770
Other names: DSM 19582, IAM 14980, JCM 21451, M. psychrotolerans, Marinilactibacillus psychrotolerans Ishikawa et al. 2003, Marinolactobacillus psychrotolerans, NBRC 100002, NCIMB 13873, NRIC 0510, strain M13-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.