STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDC79628.1ABC-2 type transport system ATP-binding protein. (302 aa)    
Predicted Functional Partners:
SDC79674.1
ABC-2 type transport system permease protein.
  
 0.916
SDC06944.1
Putative ABC transport system ATP-binding protein.
 
   
0.778
SDC43537.1
Energy-coupling factor transport system ATP-binding protein.
 
 
 
0.723
SDD00347.1
Hypothetical protein.
  
 0.625
SDC53987.1
NitT/TauT family transport system ATP-binding protein.
 
    
0.604
SDD00080.1
ABC-2 type transport system permease protein.
  
 0.576
msmK
Multiple sugar transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
  
 
0.543
rpsE
Small subunit ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.
  
    0.529
SDC76623.1
Peptide/nickel transport system permease protein.
    
 0.513
SDC36874.1
ABC-2 type transport system ATP-binding protein.
  
 
 
0.487
Your Current Organism:
Marinilactibacillus psychrotolerans
NCBI taxonomy Id: 191770
Other names: DSM 19582, IAM 14980, JCM 21451, M. psychrotolerans, Marinilactibacillus psychrotolerans Ishikawa et al. 2003, Marinolactobacillus psychrotolerans, NBRC 100002, NCIMB 13873, NRIC 0510, strain M13-2
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