STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
deoCDeoxyribose-phosphate aldolase. (233 aa)    
Predicted Functional Partners:
deoB
Phosphopentomutase.
 
 
 0.979
SDD06797.1
Phosphopentomutase.
 
 
 0.946
SDD05218.1
Phosphoglucomutase.
 
 
 0.895
SDC31234.1
Ribokinase.
   
 0.893
SDC10884.1
PTS system, beta-glucosides-specific IIC component.
    
 0.890
SDC71432.1
PTS system, beta-glucosides-specific IIC component.
    
 0.890
SDC92424.1
PTS system beta-glucoside-specific IIA component, Glc family /PTS system beta-glucoside-specific IIB component, Glc family /PTS system beta-glucoside-specific IIC component, Glc family.
    
 0.890
SDD22296.1
PTS system, beta-glucosides-specific IIC component.
    
 0.890
SDD42780.1
PTS system, sucrose-specific IIC component.
    
 0.890
SDD45194.1
PTS system, beta-glucosides-specific IIC component.
    
 0.890
Your Current Organism:
Marinilactibacillus psychrotolerans
NCBI taxonomy Id: 191770
Other names: DSM 19582, IAM 14980, JCM 21451, M. psychrotolerans, Marinilactibacillus psychrotolerans Ishikawa et al. 2003, Marinolactobacillus psychrotolerans, NBRC 100002, NCIMB 13873, NRIC 0510, strain M13-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.