STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDC83599.1Spermidine/putrescine transport system permease protein. (270 aa)    
Predicted Functional Partners:
SDC83515.1
Spermidine/putrescine transport system substrate-binding protein.
 
 0.999
SDC83557.1
Spermidine/putrescine transport system permease protein.
 
0.999
SDC83654.1
Spermidine/putrescine transport system ATP-binding protein.
 0.999
SDC96630.1
Multiple sugar transport system ATP-binding protein.
  
 0.708
msmK
Multiple sugar transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
  
 0.644
SDC75925.1
Exonuclease SbcC.
    
 0.618
murB
UDP-N-acetylmuramate dehydrogenase.
  
  
 0.537
SDC06944.1
Putative ABC transport system ATP-binding protein.
 
 
  0.446
SDC42226.1
Fructooligosaccharide transport system permease protein.
   
 
  0.433
SDC42780.1
Raffinose/stachyose/melibiose transport system permease protein.
   
 
  0.433
Your Current Organism:
Marinilactibacillus psychrotolerans
NCBI taxonomy Id: 191770
Other names: DSM 19582, IAM 14980, JCM 21451, M. psychrotolerans, Marinilactibacillus psychrotolerans Ishikawa et al. 2003, Marinolactobacillus psychrotolerans, NBRC 100002, NCIMB 13873, NRIC 0510, strain M13-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.