STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDC90136.1Unsaturated chondroitin disaccharide hydrolase. (376 aa)    
Predicted Functional Partners:
SDC90097.1
Hypothetical protein.
     0.941
SDC90060.1
Heparinase II/III-like protein.
 
     0.923
SDC90013.1
Hypothetical protein.
 
     0.895
SDC89175.1
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase.
 
   
 0.783
SDC90177.1
Beta-galactosidase.
 
 
 0.776
SDC89346.1
Unsaturated rhamnogalacturonyl hydrolase.
  
     0.649
SDC89970.1
Uncharacterized membrane protein YesL.
 
    0.621
SDC89219.1
2-deoxy-D-gluconate 3-dehydrogenase.
 
   
 0.602
SDC89823.1
Carbohydrate ABC transporter substrate-binding protein, CUT1 family.
 
    0.578
SDC89308.1
Sugar phosphate isomerase/epimerase.
 
    0.510
Your Current Organism:
Marinilactibacillus psychrotolerans
NCBI taxonomy Id: 191770
Other names: DSM 19582, IAM 14980, JCM 21451, M. psychrotolerans, Marinilactibacillus psychrotolerans Ishikawa et al. 2003, Marinolactobacillus psychrotolerans, NBRC 100002, NCIMB 13873, NRIC 0510, strain M13-2
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