STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDD00080.1ABC-2 type transport system permease protein. (254 aa)    
Predicted Functional Partners:
SDD00032.1
ABC-2 type transport system ATP-binding protein.
 
 0.979
SDC99993.1
Phospholipase_D-nuclease N-terminal.
 
    0.976
SDC99959.1
Transcriptional regulator, contains XRE-family HTH domain.
 
     0.954
SDC36874.1
ABC-2 type transport system ATP-binding protein.
  
 0.591
SDC33423.1
ABC-2 type transport system ATP-binding protein.
  
 0.591
SDC40571.1
ABC-2 type transport system ATP-binding protein.
  
 0.591
SDC42101.1
ABC-2 type transport system ATP-binding protein.
  
 0.591
SDC93161.1
ABC-2 type transport system ATP-binding protein.
  
 0.591
SDC93321.1
ABC-2 type transport system ATP-binding protein.
  
 0.591
SDD00118.1
MutS domain V.
 
     0.582
Your Current Organism:
Marinilactibacillus psychrotolerans
NCBI taxonomy Id: 191770
Other names: DSM 19582, IAM 14980, JCM 21451, M. psychrotolerans, Marinilactibacillus psychrotolerans Ishikawa et al. 2003, Marinolactobacillus psychrotolerans, NBRC 100002, NCIMB 13873, NRIC 0510, strain M13-2
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