STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDD03903.1Competence protein ComFC. (231 aa)    
Predicted Functional Partners:
SDD03857.1
Competence protein ComFA.
  
  
 0.932
SDB96141.1
Competence protein ComEC.
 
  
 0.890
dprA
DNA processing protein.
 
 
 0.856
flgC
Flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
   
   0.746
SDC52946.1
DNA repair protein RadC.
 
    0.726
SDB97652.1
DNA replication and repair protein RadC.
 
    0.725
SDC56021.1
Prephenate dehydrogenase.
   
  
 0.716
nagA
N-acetylglucosamine 6-phosphate deacetylase.
  
    0.712
hemY
Oxygen-dependent protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.
  
    0.682
SDC55367.1
Diguanylate cyclase (GGDEF) domain-containing protein.
  
    0.674
Your Current Organism:
Marinilactibacillus psychrotolerans
NCBI taxonomy Id: 191770
Other names: DSM 19582, IAM 14980, JCM 21451, M. psychrotolerans, Marinilactibacillus psychrotolerans Ishikawa et al. 2003, Marinolactobacillus psychrotolerans, NBRC 100002, NCIMB 13873, NRIC 0510, strain M13-2
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