STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDD07185.1Arabinose-5-phosphate isomerase. (198 aa)    
Predicted Functional Partners:
SDD07223.1
Transcriptional antiterminator.
 
    0.823
SDD07396.1
PTS system, ascorbate-specific IIB component.
 
     0.739
SDD07263.1
2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase.
  
    0.718
SDD07303.1
4-hydroxy-tetrahydrodipicolinate synthase.
       0.707
SDD05218.1
Phosphoglucomutase.
  
   0.640
SDD07354.1
PTS system, ascorbate-specific IIC component.
       0.636
SDD07456.1
Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type).
  
    0.625
pfkA
6-phosphofructokinase.
    
 0.529
SDC11835.1
2-keto-3-deoxygluconate kinase.
  
    0.506
rpe
Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
  
 
 0.500
Your Current Organism:
Marinilactibacillus psychrotolerans
NCBI taxonomy Id: 191770
Other names: DSM 19582, IAM 14980, JCM 21451, M. psychrotolerans, Marinilactibacillus psychrotolerans Ishikawa et al. 2003, Marinolactobacillus psychrotolerans, NBRC 100002, NCIMB 13873, NRIC 0510, strain M13-2
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